| Round 1 |
| 05-09-1988 |
BFC Dynamo - SV Werder Bremen |
3-0 |
 |
 |
| 05-09-1988 |
Valur Reykjavik - AS Monaco |
1-0 |
|
|
| 06-09-1988 |
Club Brugge KV - Brondby IF |
1-0 |
|
|
| 06-09-1988 |
Gornik Zabrze - Jeunesse Esch |
3-0 |
|
|
| 06-09-1988 |
Hamrun Spartans - KS 17 Nentori Tirane |
2-1 |
|
|
| 06-09-1988 |
Budapesti Honved SE - Celtic FC |
1-0 |
|
|
| 06-09-1988 |
Pezoporikos Larnaca - IFK Goteborg |
1-2 |
|
|
| 06-09-1988 |
AE Larisa - Neuchatel Xamax |
2-1 |
|
|
| 06-09-1988 |
FC Porto - HJK Helsinki |
3-0 |
|
|
| 06-09-1988 |
TJ Sparta CKD Praha - Steaua Bucharest |
1-5 |
|
|
| 06-09-1988 |
Real Madrid - Moss FK |
3-0 |
|
|
| 06-09-1988 |
Levski Sofia - AC Milan |
0-2 |
|
|
| 07-09-1988 |
Spartak Moscow - Glentoran FC |
2-0 |
|
|
| 07-09-1988 |
Dundalk FC - Red Star Belgrade |
0-5 |
|
|
| 07-09-1988 |
Rapid Vienna - Galatasaray |
2-1 |
|
|
| Round 1 |
| 04-10-1988 |
AS Monaco - Valur Reykjavik |
2-0 |
|
|
| 05-10-1988 |
Brondby IF - Club Brugge KV |
2-1 |
|
|
| 05-10-1988 |
Red Star Belgrade - Dundalk FC |
3-0 |
|
|
| 05-10-1988 |
Jeunesse Esch - Gornik Zabrze |
1-4 |
|
|
| 05-10-1988 |
KS 17 Nentori Tirane - Hamrun Spartans |
2-0 |
|
|
| 05-10-1988 |
Celtic FC - Budapesti Honved SE |
4-0 |
|
|
| 05-10-1988 |
IFK Goteborg - Pezoporikos Larnaca |
5-1 |
|
|
| 05-10-1988 |
Neuchatel Xamax - AE Larisa |
5-1 on pens |
|
|
| 05-10-1988 |
HJK Helsinki - FC Porto |
2-0 |
|
|
| 05-10-1988 |
Steaua Bucharest - TJ Sparta CKD Praha |
2-2 |
|
|
| 05-10-1988 |
Moss FK - Real Madrid |
0-1 |
|
|
| 05-10-1988 |
Galatasaray - Rapid Vienna |
2-0 |
|
|
| 05-10-1988 |
Glentoran FC - Spartak Moscow |
1-1 |
|
|
| 06-10-1988 |
AC Milan - Levski Sofia |
5-2 |
|
|
| 11-10-1988 |
SV Werder Bremen - BFC Dynamo |
5-0 |
|
|
| Last 16 |
| 25-10-1988 |
Celtic FC - SV Werder Bremen |
0-1 |
|
|
| 25-10-1988 |
Club Brugge KV - AS Monaco |
1-0 |
|
|
| 25-10-1988 |
KS 17 Nentori Tirane - IFK Goteborg |
0-3 |
|
|
| 25-10-1988 |
AC Milan - Red Star Belgrade |
1-1 |
|
|
| 25-10-1988 |
Steaua Bucharest - Spartak Moscow |
3-0 |
|
|
| 25-10-1988 |
Gornik Zabrze - Real Madrid |
0-1 |
|
|
| 26-10-1988 |
PSV Eindhoven - FC Porto |
5-0 |
|
|
| 26-10-1988 |
Neuchatel Xamax - Galatasaray |
3-0 |
|
|
| Last 16 |
| 07-11-1988 |
SV Werder Bremen - Celtic FC |
0-0 |
|
|
| 08-11-1988 |
AS Monaco - Club Brugge KV |
6-1 |
|
|
| 08-11-1988 |
IFK Goteborg - KS 17 Nentori Tirane |
1-0 |
|
|
| 08-11-1988 |
Spartak Moscow - Steaua Bucharest |
1-2 |
|
|
| 09-11-1988 |
Galatasaray - Neuchatel Xamax |
5-0 |
|
|
| 09-11-1988 |
FC Porto - PSV Eindhoven |
2-0 |
|
|
| 09-11-1988 |
Red Star Belgrade - AC Milan |
3-5 on pens |
|
|
| 09-11-1988 |
Real Madrid - Gornik Zabrze |
3-2 |
|
|
| Quarter Final |
| 28-02-1989 |
SV Werder Bremen - AC Milan |
0-0 |
|
|
| 28-02-1989 |
IFK Goteborg - Steaua Bucharest |
1-0 |
|
|
| 01-03-1989 |
PSV Eindhoven - Real Madrid |
1-1 |
|
|
| 01-03-1989 |
AS Monaco - Galatasaray |
0-1 |
|
|
| Quarter Final |
| 14-03-1989 |
AC Milan - SV Werder Bremen |
1-0 |
|
|
| 14-03-1989 |
Steaua Bucharest - IFK Goteborg |
5-1 |
|
|
| 15-03-1989 |
Galatasaray - AS Monaco |
1-1 |
|
|
| 15-03-1989 |
Real Madrid - PSV Eindhoven |
2-1 AET |
|
|
| Semi Final |
| 04-04-1989 |
Real Madrid - AC Milan |
1-1 |
|
|
| 05-04-1989 |
Steaua Bucharest - Galatasaray |
4-0 |
|
|
| Semi Final |
| 18-04-1989 |
AC Milan - Real Madrid |
5-0 |
|
|
| 19-04-1989 |
Galatasaray - Steaua Bucharest |
1-1 |
|
|
| Final |
| 24-05-1989 |
AC Milan - Steaua Bucharest |
4-0 |
|
|