| Qualification Round |
| 10-08-1988 |
Bekescsaba 1912 Elore SE - Bryne FK |
3-0 |
 |
 |
| Qualification Round |
| 24-08-1988 |
Bryne FK - Bekescsaba 1912 Elore SE |
2-1 |
|
|
| Round 1 |
| 05-09-1988 |
Grasshopper Club Zurich - Eintracht Frankfurt |
0-0 |
|
|
| 05-09-1988 |
Floriana FC - Dundee United FC |
0-0 |
|
|
| 05-09-1988 |
Omonia Nicosia - Panathinaikos FC |
0-1 |
|
|
| 06-09-1988 |
Derry City - Cardiff City |
0-0 |
|
|
| 06-09-1988 |
TJ Internacional Slovnaft ZTS Bratislava Petrzalka - CFKA Sredets |
2-3 |
|
|
| 06-09-1988 |
Fram Reykjavik - FC Barcelona |
0-2 |
|
|
| 06-09-1988 |
FK Borac Banja Luka - Metalist Kharkiv |
2-0 |
|
|
| 06-09-1988 |
FC Metz - RSC Anderlecht |
1-3 |
 |
|
| 06-09-1988 |
IFK Norrkoping - UC Sampdoria |
2-1 |
|
|
| 07-09-1988 |
Sakaryaspor - Bekescsaba 1912 Elore SE |
2-0 |
|
|
| 07-09-1988 |
FC Dinamo 1948 - FC Kuusysi |
3-0 |
|
|
| 07-09-1988 |
FC Carl Zeiss Jena - Kremser SC |
5-0 |
|
|
| 07-09-1988 |
Glenavon FC - Aarhus GF |
1-4 |
|
|
| 07-09-1988 |
Flamurtari FC - Lech Poznan |
2-3 |
|
|
| 07-09-1988 |
Roda JC Kerkrade - Vitoria Guimaraes SC |
2-0 |
|
|
| 07-09-1988 |
KV Mechelen - FC Avenir Beggen |
5-0 |
|
|
| Round 1 |
| 28-09-1988 |
FC Avenir Beggen - KV Mechelen |
1-3 |
|
|
| 04-10-1988 |
Eintracht Frankfurt - Grasshopper Club Zurich |
1-0 |
|
|
| 05-10-1988 |
Cardiff City - Derry City |
4-0 |
|
|
| 05-10-1988 |
CFKA Sredets - TJ Internacional Slovnaft ZTS Bratislava Petrzalka |
5-0 |
|
|
| 05-10-1988 |
Dundee United FC - Floriana FC |
1-0 |
|
|
| 05-10-1988 |
FC Barcelona - Fram Reykjavik |
5-0 |
|
|
| 05-10-1988 |
Metalist Kharkiv - FK Borac Banja Luka |
4-0 |
|
|
| 05-10-1988 |
Panathinaikos FC - Omonia Nicosia |
2-0 |
|
|
| 05-10-1988 |
RSC Anderlecht - FC Metz |
2-0 |
|
|
| 05-10-1988 |
Bekescsaba 1912 Elore SE - Sakaryaspor |
1-0 |
|
|
| 05-10-1988 |
Lech Poznan - Flamurtari FC |
1-0 |
|
|
| 05-10-1988 |
Aarhus GF - Glenavon FC |
3-1 |
|
|
| 05-10-1988 |
FC Kuusysi - FC Dinamo 1948 |
0-3 |
|
|
| 05-10-1988 |
Vitoria Guimaraes SC - Roda JC Kerkrade |
1-0 |
|
|
| 05-10-1988 |
Kremser SC - FC Carl Zeiss Jena |
1-0 |
|
|
| 06-10-1988 |
UC Sampdoria - IFK Norrkoping |
2-0 |
|
|
| Last 16 |
| 25-10-1988 |
Cardiff City - Aarhus GF |
1-2 |
|
|
| 25-10-1988 |
CFKA Sredets - Panathinaikos FC |
2-0 |
|
|
| 25-10-1988 |
FC Carl Zeiss Jena - UC Sampdoria |
1-1 |
|
|
| 26-10-1988 |
Roda JC Kerkrade - Metalist Kharkiv |
1-0 |
|
|
| 26-10-1988 |
KV Mechelen - RSC Anderlecht |
1-0 |
|
|
| 26-10-1988 |
Eintracht Frankfurt - Sakaryaspor |
3-1 |
|
|
| 26-10-1988 |
Dundee United FC - FC Dinamo 1948 |
0-1 |
|
|
| 26-10-1988 |
FC Barcelona - Lech Poznan |
1-1 |
|
|
| Last 16 |
| 08-11-1988 |
Aarhus GF - Cardiff City |
4-0 |
|
|
| 08-11-1988 |
Panathinaikos FC - CFKA Sredets |
0-1 |
|
|
| 08-11-1988 |
UC Sampdoria - FC Carl Zeiss Jena |
3-1 |
|
|
| 09-11-1988 |
Sakaryaspor - Eintracht Frankfurt |
0-3 |
|
|
| 09-11-1988 |
FC Dinamo 1948 - Dundee United FC |
1-1 |
|
|
| 09-11-1988 |
Metalist Kharkiv - Roda JC Kerkrade |
0-0 |
|
|
| 09-11-1988 |
Lech Poznan - FC Barcelona |
4-5 on pens |
|
|
| 09-11-1988 |
RSC Anderlecht - KV Mechelen |
0-2 |
|
|
| Quarter Final |
| 28-02-1989 |
Aarhus GF - FC Barcelona |
0-1 |
|
|
| 28-02-1989 |
CFKA Sredets - Roda JC Kerkrade |
2-1 |
|
|
| 01-03-1989 |
FC Dinamo 1948 - UC Sampdoria |
1-1 |
|
|
| 01-03-1989 |
Eintracht Frankfurt - KV Mechelen |
0-0 |
|
|
| Quarter Final |
| 14-03-1989 |
FC Barcelona - Aarhus GF |
0-0 |
|
|
| 14-03-1989 |
Roda JC Kerkrade - CFKA Sredets |
3-4 on pens |
|
|
| 15-03-1989 |
UC Sampdoria - FC Dinamo 1948 |
0-0 |
|
|
| 15-03-1989 |
KV Mechelen - Eintracht Frankfurt |
1-0 |
|
|
| Semi Final |
| 04-04-1989 |
FC Barcelona - CFKA Sredets |
4-2 |
|
|
| 05-04-1989 |
KV Mechelen - UC Sampdoria |
2-1 |
|
|
| Semi Final |
| 18-04-1989 |
CFKA Sredets - FC Barcelona |
1-2 |
|
|
| 19-04-1989 |
UC Sampdoria - KV Mechelen |
3-0 |
|
|
| Final |
| 09-05-1989 |
FC Barcelona - UC Sampdoria |
2-0 |
|
|
