| Round 1 |
| 06-09-1988 |
osters IF - DAC Dunajska Streda |
2-0 |
 |
 |
| 06-09-1988 |
FC Aarau - 1 FC Lokomotive Leipzig |
0-3 |
|
|
| 06-09-1988 |
Trakia - Dinamo Minsk |
1-2 |
|
|
| 06-09-1988 |
Servette FC - SK Sturm Graz |
1-0 |
|
|
| 06-09-1988 |
SSC Napoli - PAOK Thessaloniki |
1-0 |
|
|
| 06-09-1988 |
Montpellier HSC - SL Benfica |
0-3 |
|
|
| 06-09-1988 |
AEK Athens - Athletic Bilbao |
1-0 |
|
|
| 06-09-1988 |
FK Velez Mostar - APOEL Nicosia |
1-0 |
|
|
| 06-09-1988 |
First Vienna FC - Ikast FS |
1-0 |
|
|
| 06-09-1988 |
Molde FK - KSV Waregem |
0-0 |
|
|
| 06-09-1988 |
Dnipro Dnipropetrovsk - FC Girondins Bordeaux |
1-1 |
|
|
| 06-09-1988 |
Aberdeen FC - SG Dynamo Dresden |
0-0 |
|
|
| 06-09-1988 |
Rangers FC - GKS Katowice |
1-0 |
 |
|
| 06-09-1988 |
Inter Milan - IK Brage |
2-1 |
|
|
| 06-09-1988 |
Union Luxembourg - RC Liege |
1-7 |
|
|
| 06-09-1988 |
IA Akranes - Ujpesti Dozsa SC |
0-0 |
|
|
| 06-09-1988 |
Real Sociedad - ASVS Dukla Prague |
2-1 |
|
|
| 06-09-1988 |
Royal Antwerp FC - 1 FC Koln |
2-4 |
|
|
| 06-09-1988 |
St Patricks Athletic - Heart of Midlothian FC |
0-2 |
|
|
| 06-09-1988 |
Bayern Munich - Legia Warszawa |
3-1 |
|
|
| 06-09-1988 |
Bayer 04 Leverkusen - CF Os Belenenses |
0-1 |
|
|
| 06-09-1988 |
AS Roma - 1 FC Nuremberg |
1-2 |
|
|
| 07-09-1988 |
Besiktas JK - GNK Dinamo Zagreb |
1-0 |
|
|
| 07-09-1988 |
FK zalgiris Vilnius - Austria Vienna |
2-0 |
|
|
| 07-09-1988 |
Otelul Galati - Juventus FC |
1-0 |
|
|
| 07-09-1988 |
Sliema Wanderers - Victoria Bucharest |
0-2 |
|
|
| 07-09-1988 |
FK Partizan Belgrade - Slavia Sofia |
5-0 |
|
|
| 07-09-1988 |
Turun Palloseura - Linfield FC |
0-0 |
|
|
| 07-09-1988 |
Malmo FF - Torpedo Moskau |
2-0 |
|
|
| 07-09-1988 |
FC Groningen - Atletico de Madrid |
1-0 |
|
|
| 07-09-1988 |
VfB Stuttgart - Tatabanyai SC |
2-0 |
|
|
| 07-09-1988 |
Sporting CP - Ajax Amsterdam |
4-2 |
|
|
| Round 1 |
| 05-10-1988 |
IK Brage - Inter Milan |
1-2 |
|
|
| 05-10-1988 |
APOEL Nicosia - FK Velez Mostar |
2-5 |
|
|
| 05-10-1988 |
Ikast FS - First Vienna FC |
2-1 |
|
|
| 05-10-1988 |
Athletic Bilbao - AEK Athens |
2-0 |
|
|
| 05-10-1988 |
KSV Waregem - Molde FK |
5-1 |
|
|
| 05-10-1988 |
SL Benfica - Montpellier HSC |
3-1 |
|
|
| 05-10-1988 |
FC Girondins Bordeaux - Dnipro Dnipropetrovsk |
2-1 |
|
|
| 05-10-1988 |
SG Dynamo Dresden - Aberdeen FC |
2-0 |
|
|
| 05-10-1988 |
GKS Katowice - Rangers FC |
2-4 |
|
|
| 05-10-1988 |
Ujpesti Dozsa SC - IA Akranes |
2-1 |
|
|
| 05-10-1988 |
RC Liege - Union Luxembourg |
4-0 |
|
|
| 05-10-1988 |
ASVS Dukla Prague - Real Sociedad |
3-2 |
|
|
| 05-10-1988 |
Heart of Midlothian FC - St Patricks Athletic |
2-0 |
|
|
| 05-10-1988 |
PAOK Thessaloniki - SSC Napoli |
1-1 |
|
|
| 05-10-1988 |
1 FC Nuremberg - AS Roma |
1-3 AET |
|
|
| 05-10-1988 |
CF Os Belenenses - Bayer 04 Leverkusen |
1-0 |
|
|
| 05-10-1988 |
Legia Warszawa - Bayern Munich |
3-7 |
|
|
| 05-10-1988 |
SK Sturm Graz - Servette FC |
0-0 |
|
|
| 05-10-1988 |
Dinamo Minsk - Trakia |
0-0 |
|
|
| 05-10-1988 |
1 FC Lokomotive Leipzig - FC Aarau |
4-0 |
|
|
| 05-10-1988 |
Victoria Bucharest - Sliema Wanderers |
6-1 |
|
|
| 05-10-1988 |
DAC Dunajska Streda - osters IF |
6-0 |
|
|
| 05-10-1988 |
Slavia Sofia - FK Partizan Belgrade |
0-5 |
|
|
| 05-10-1988 |
GNK Dinamo Zagreb - Besiktas JK |
2-0 |
|
|
| 05-10-1988 |
Torpedo Moskau - Malmo FF |
2-1 AET |
|
|
| 05-10-1988 |
Ajax Amsterdam - Sporting CP |
1-2 |
|
|
| 05-10-1988 |
Juventus FC - Otelul Galati |
5-0 |
|
|
| 05-10-1988 |
Linfield FC - Turun Palloseura |
1-1 |
|
|
| 05-10-1988 |
Atletico de Madrid - FC Groningen |
2-1 |
|
|
| 07-10-1988 |
Austria Vienna - FK zalgiris Vilnius |
5-2 |
|
|
| 11-10-1988 |
Tatabanyai SC - VfB Stuttgart |
2-1 |
|
|
| 12-10-1988 |
1 FC Koln - Royal Antwerp FC |
2-1 |
|
|
| Round 2 |
| 25-10-1988 |
GNK Dinamo Zagreb - VfB Stuttgart |
1-3 |
|
|
| 25-10-1988 |
Bayern Munich - DAC Dunajska Streda |
3-1 |
|
|
| 25-10-1988 |
1 FC Koln - Rangers FC |
2-0 |
|
|
| 25-10-1988 |
FK Velez Mostar - CF Os Belenenses |
0-0 |
|
|
| 25-10-1988 |
Sporting CP - Real Sociedad |
1-2 |
|
|
| 25-10-1988 |
Ujpesti Dozsa SC - FC Girondins Bordeaux |
0-1 |
|
|
| 25-10-1988 |
Juventus FC - Athletic Bilbao |
5-1 |
|
|
| 25-10-1988 |
SG Dynamo Dresden - KSV Waregem |
4-1 |
|
|
| 25-10-1988 |
First Vienna FC - Turun Palloseura |
2-1 |
|
|
| 25-10-1988 |
Malmo FF - Inter Milan |
0-1 |
|
|
| 25-10-1988 |
RC Liege - SL Benfica |
2-1 |
|
|
| 25-10-1988 |
1 FC Lokomotive Leipzig - SSC Napoli |
1-1 |
|
|
| 26-10-1988 |
FK Partizan Belgrade - AS Roma |
4-2 |
|
|
| 26-10-1988 |
Dinamo Minsk - Victoria Bucharest |
2-1 |
|
|
| 26-10-1988 |
FC Groningen - Servette FC |
2-0 |
|
|
| 26-10-1988 |
Heart of Midlothian FC - Austria Vienna |
0-0 |
|
|
| Round 2 |
| 08-11-1988 |
VfB Stuttgart - GNK Dinamo Zagreb |
1-1 |
|
|
| 08-11-1988 |
DAC Dunajska Streda - Bayern Munich |
0-2 |
|
|
| 08-11-1988 |
Rangers FC - 1 FC Koln |
1-1 |
|
|
| 08-11-1988 |
CF Os Belenenses - FK Velez Mostar |
3-4 on pens |
|
|
| 08-11-1988 |
Real Sociedad - Sporting CP |
0-0 |
|
|
| 08-11-1988 |
FC Girondins Bordeaux - Ujpesti Dozsa SC |
1-0 |
|
|
| 08-11-1988 |
Athletic Bilbao - Juventus FC |
3-2 |
|
|
| 08-11-1988 |
Turun Palloseura - First Vienna FC |
1-0 |
|
|
| 08-11-1988 |
Inter Milan - Malmo FF |
1-1 |
|
|
| 08-11-1988 |
SSC Napoli - 1 FC Lokomotive Leipzig |
2-0 |
|
|
| 09-11-1988 |
Victoria Bucharest - Dinamo Minsk |
1-0 |
|
|
| 09-11-1988 |
AS Roma - FK Partizan Belgrade |
2-0 |
|
|
| 09-11-1988 |
Austria Vienna - Heart of Midlothian FC |
0-1 |
|
|
| 09-11-1988 |
KSV Waregem - SG Dynamo Dresden |
2-1 |
|
|
| 09-11-1988 |
Servette FC - FC Groningen |
1-1 |
|
|
| 09-11-1988 |
SL Benfica - RC Liege |
1-1 |
|
|
| Last 16 |
| 22-11-1988 |
FC Groningen - VfB Stuttgart |
1-3 |
|
|
| 22-11-1988 |
Bayern Munich - Inter Milan |
0-2 |
|
|
| 22-11-1988 |
Real Sociedad - 1 FC Koln |
1-0 |
|
|
| 22-11-1988 |
FC Girondins Bordeaux - SSC Napoli |
0-1 |
|
|
| 22-11-1988 |
SG Dynamo Dresden - AS Roma |
2-0 |
|
|
| 23-11-1988 |
Victoria Bucharest - Turun Palloseura |
1-0 |
|
|
| 23-11-1988 |
RC Liege - Juventus FC |
0-1 |
|
|
| 23-11-1988 |
Heart of Midlothian FC - FK Velez Mostar |
3-0 |
|
|
| Last 16 |
| 06-12-1988 |
VfB Stuttgart - FC Groningen |
2-0 |
|
|
| 06-12-1988 |
Inter Milan - Bayern Munich |
1-3 |
|
|
| 06-12-1988 |
1 FC Koln - Real Sociedad |
2-2 |
|
|
| 06-12-1988 |
SSC Napoli - FC Girondins Bordeaux |
0-0 |
|
|
| 06-12-1988 |
AS Roma - SG Dynamo Dresden |
0-2 |
|
|
| 07-12-1988 |
Juventus FC - RC Liege |
1-0 |
|
|
| 07-12-1988 |
Turun Palloseura - Victoria Bucharest |
3-2 |
|
|
| 07-12-1988 |
FK Velez Mostar - Heart of Midlothian FC |
2-1 |
|
|
| Quarter Final |
| 27-02-1989 |
VfB Stuttgart - Real Sociedad |
1-0 |
|
|
| 27-02-1989 |
Heart of Midlothian FC - Bayern Munich |
1-0 |
|
|
| 27-02-1989 |
Juventus FC - SSC Napoli |
2-0 |
|
|
| 28-02-1989 |
Victoria Bucharest - SG Dynamo Dresden |
1-1 |
|
|
| Quarter Final |
| 14-03-1989 |
Bayern Munich - Heart of Midlothian FC |
2-0 |
|
|
| 14-03-1989 |
SSC Napoli - Juventus FC |
3-0 AET |
|
|
| 15-03-1989 |
SG Dynamo Dresden - Victoria Bucharest |
4-0 |
|
|
| 15-03-1989 |
Real Sociedad - VfB Stuttgart |
2-4 on pens |
|
|
| Semi Final |
| 04-04-1989 |
VfB Stuttgart - SG Dynamo Dresden |
1-0 |
|
|
| 04-04-1989 |
SSC Napoli - Bayern Munich |
2-0 |
|
|
| Semi Final |
| 18-04-1989 |
SG Dynamo Dresden - VfB Stuttgart |
1-1 |
|
|
| 18-04-1989 |
Bayern Munich - SSC Napoli |
2-2 |
|
|
| Final |
| 03-05-1989 |
SSC Napoli - VfB Stuttgart |
2-1 |
|
|
| Final |
| 16-05-1989 |
VfB Stuttgart - SSC Napoli |
3-3 |
|
|
